HL_6PC5_043

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6PC5|1|I|U|1729, 6PC5|1|I|C|1730, 6PC5|1|I|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC5_043 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3826

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6PC5|1|I|C|1727
6PC5|1|I|C|1728
6PC5|1|I|U|1729
6PC5|1|I|C|1730
6PC5|1|I|G|1731
6PC5|1|I|C|1732
6PC5|1|I|G|1733

Current chains

Chain I

23S ribosomal RNA

Nearby chains