HL_6PC5_074

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCAC

Length

57 nucleotides

Bulged bases

6PC5|1|I|U|2122, 6PC5|1|I|G|2125, 6PC5|1|I|A|2126, 6PC5|1|I|G|2128, 6PC5|1|I|U|2131, 6PC5|1|I|U|2132, 6PC5|1|I|G|2133, 6PC5|1|I|A|2134, 6PC5|1|I|A|2135, 6PC5|1|I|C|2145, 6PC5|1|I|G|2157, 6PC5|1|I|A|2158, 6PC5|1|I|C|2160, 6PC5|1|I|A|2163, 6PC5|1|I|C|2164, 6PC5|1|I|U|2167, 6PC5|1|I|U|2172, 6PC5|1|I|A|2173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC5|1|I|G|2121
6PC5|1|I|U|2122
6PC5|1|I|G|2123
6PC5|1|I|G|2124
6PC5|1|I|G|2125
6PC5|1|I|A|2126
6PC5|1|I|G|2127
6PC5|1|I|G|2128
6PC5|1|I|C|2129
6PC5|1|I|U|2130
6PC5|1|I|U|2131
6PC5|1|I|U|2132
6PC5|1|I|G|2133
6PC5|1|I|A|2134
6PC5|1|I|A|2135
6PC5|1|I|G|2136
6PC5|1|I|U|2137
6PC5|1|I|G|2138
6PC5|1|I|U|2139
6PC5|1|I|G|2140
6PC5|1|I|G|2141
6PC5|1|I|A|2142
6PC5|1|I|C|2143
6PC5|1|I|G|2144
6PC5|1|I|C|2145
6PC5|1|I|C|2146
6PC5|1|I|A|2147
6PC5|1|I|G|2148
6PC5|1|I|U|2149
6PC5|1|I|C|2150
6PC5|1|I|U|2151
6PC5|1|I|G|2152
6PC5|1|I|C|2153
6PC5|1|I|A|2154
6PC5|1|I|U|2155
6PC5|1|I|G|2156
6PC5|1|I|G|2157
6PC5|1|I|A|2158
6PC5|1|I|G|2159
6PC5|1|I|C|2160
6PC5|1|I|C|2161
6PC5|1|I|G|2162
6PC5|1|I|A|2163
6PC5|1|I|C|2164
6PC5|1|I|C|2165
6PC5|1|I|U|2166
6PC5|1|I|U|2167
6PC5|1|I|G|2168
6PC5|1|I|A|2169
6PC5|1|I|A|2170
6PC5|1|I|A|2171
6PC5|1|I|U|2172
6PC5|1|I|A|2173
6PC5|1|I|C|2174
6PC5|1|I|C|2175
6PC5|1|I|A|2176
6PC5|1|I|C|2177

Current chains

Chain I

23S ribosomal RNA

Nearby chains