HL_6PC6_004

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

6PC6|1|I|U|138, 6PC6|1|I|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC6_004 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3836

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6PC6|1|I|G|136
6PC6|1|I|U|137
6PC6|1|I|U|138
6PC6|1|I|U|139
6PC6|1|I|C|140
6PC6|1|I|G|141
6PC6|1|I|A|142
6PC6|1|I|C|143

Current chains

Chain I

23S ribosomal RNA

Nearby chains