HL_6PC6_008

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC6_008 not in the Motif Atlas

Homologous match to HL_4WF9_008

Geometric discrepancy: 0.0948

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

6PC6|1|I|C|246
6PC6|1|I|G|247
6PC6|1|I|G|248
6PC6|1|I|C|249
6PC6|1|I|G|250
6PC6|1|I|A|251
6PC6|1|I|G|252

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15