3D structure

PDB id
6PC6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 47
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CUG(OMG)GGCGG
Length
9 nucleotides
Bulged bases
6PC6|1|I|G|2250
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6PC6_052 not in the Motif Atlas
Homologous match to HL_4WF9_049
Geometric discrepancy: 0.1021
The information below is about HL_4WF9_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_85367.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

6PC6|1|I|C|2248
6PC6|1|I|U|2249
6PC6|1|I|G|2250
6PC6|1|I|OMG|2251
6PC6|1|I|G|2252
6PC6|1|I|G|2253
6PC6|1|I|C|2254
6PC6|1|I|G|2255
6PC6|1|I|G|2256

Current chains

Chain I
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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