HL_6PC6_078

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

84 nucleotides

Bulged bases

6PC6|1|I|C|2104, 6PC6|1|I|U|2109, 6PC6|1|I|G|2115, 6PC6|1|I|U|2118, 6PC6|1|I|U|2122, 6PC6|1|I|G|2125, 6PC6|1|I|A|2126, 6PC6|1|I|G|2128, 6PC6|1|I|U|2131, 6PC6|1|I|U|2132, 6PC6|1|I|A|2135, 6PC6|1|I|C|2146, 6PC6|1|I|A|2147, 6PC6|1|I|C|2153, 6PC6|1|I|G|2156, 6PC6|1|I|G|2159, 6PC6|1|I|C|2160, 6PC6|1|I|C|2161, 6PC6|1|I|A|2163, 6PC6|1|I|U|2167, 6PC6|1|I|A|2171, 6PC6|1|I|U|2172, 6PC6|1|I|A|2173, 6PC6|1|I|C|2174

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC6|1|I|C|2103
6PC6|1|I|C|2104
6PC6|1|I|U|2105
6PC6|1|I|U|2106
6PC6|1|I|G|2107
6PC6|1|I|A|2108
6PC6|1|I|U|2109
6PC6|1|I|G|2110
6PC6|1|I|U|2111
6PC6|1|I|G|2112
6PC6|1|I|U|2113
6PC6|1|I|A|2114
6PC6|1|I|G|2115
6PC6|1|I|G|2116
6PC6|1|I|A|2117
6PC6|1|I|U|2118
6PC6|1|I|A|2119
6PC6|1|I|G|2120
6PC6|1|I|G|2121
6PC6|1|I|U|2122
6PC6|1|I|G|2123
6PC6|1|I|G|2124
6PC6|1|I|G|2125
6PC6|1|I|A|2126
6PC6|1|I|G|2127
6PC6|1|I|G|2128
6PC6|1|I|C|2129
6PC6|1|I|U|2130
6PC6|1|I|U|2131
6PC6|1|I|U|2132
6PC6|1|I|G|2133
6PC6|1|I|A|2134
6PC6|1|I|A|2135
6PC6|1|I|G|2136
6PC6|1|I|U|2137
6PC6|1|I|G|2138
6PC6|1|I|U|2139
6PC6|1|I|G|2140
6PC6|1|I|G|2141
6PC6|1|I|A|2142
6PC6|1|I|C|2143
6PC6|1|I|G|2144
6PC6|1|I|C|2145
6PC6|1|I|C|2146
6PC6|1|I|A|2147
6PC6|1|I|G|2148
6PC6|1|I|U|2149
6PC6|1|I|C|2150
6PC6|1|I|U|2151
6PC6|1|I|G|2152
6PC6|1|I|C|2153
6PC6|1|I|A|2154
6PC6|1|I|U|2155
6PC6|1|I|G|2156
6PC6|1|I|G|2157
6PC6|1|I|A|2158
6PC6|1|I|G|2159
6PC6|1|I|C|2160
6PC6|1|I|C|2161
6PC6|1|I|G|2162
6PC6|1|I|A|2163
6PC6|1|I|C|2164
6PC6|1|I|C|2165
6PC6|1|I|U|2166
6PC6|1|I|U|2167
6PC6|1|I|G|2168
6PC6|1|I|A|2169
6PC6|1|I|A|2170
6PC6|1|I|A|2171
6PC6|1|I|U|2172
6PC6|1|I|A|2173
6PC6|1|I|C|2174
6PC6|1|I|C|2175
6PC6|1|I|A|2176
6PC6|1|I|C|2177
6PC6|1|I|C|2178
6PC6|1|I|C|2179
6PC6|1|I|U|2180
6PC6|1|I|U|2181
6PC6|1|I|U|2182
6PC6|1|I|A|2183
6PC6|1|I|A|2184
6PC6|1|I|U|2185
6PC6|1|I|G|2186

Current chains

Chain I

23S ribosomal RNA

Nearby chains