HL_6PC8_035

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6PC8|1|I|G|1452, 6PC8|1|I|A|1453, 6PC8|1|I|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_035 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.1215

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6PC8|1|I|C|1451
6PC8|1|I|G|1452
6PC8|1|I|A|1453
6PC8|1|I|C|1454
6PC8|1|I|G|1455
6PC8|1|I|G|1456
6PC8|1|I|U|1457
6PC8|1|I|U|1458
6PC8|1|I|G|1459

Current chains

Chain I

23S ribosomal RNA

Nearby chains