HL_6PC8_047

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG(PSU)AAC(3TD)A(PSU)AACG

Length

13 nucleotides

Bulged bases

6PC8|1|I|A|1912, 6PC8|1|I|A|1913, 6PC8|1|I|C|1914, 6PC8|1|I|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_047 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3849

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6PC8|1|I|C|1909
6PC8|1|I|G|1910
6PC8|1|I|PSU|1911
6PC8|1|I|A|1912
6PC8|1|I|A|1913
6PC8|1|I|C|1914
6PC8|1|I|3TD|1915
6PC8|1|I|A|1916
6PC8|1|I|PSU|1917
6PC8|1|I|A|1918
6PC8|1|I|A|1919
6PC8|1|I|C|1920
6PC8|1|I|G|1921

Current chains

Chain I

23S ribosomal RNA

Nearby chains