HL_6PC8_048

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6PC8|1|I|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_048 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1048

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

6PC8|1|I|G|1949
6PC8|1|I|G|1950
6PC8|1|I|U|1951
6PC8|1|I|A|1952
6PC8|1|I|A|1953
6PC8|1|I|G|1954
6PC8|1|I|U|1955
6PC8|1|I|U|1956
6PC8|1|I|C|1957

Current chains

Chain I

23S ribosomal RNA

Nearby chains