HL_6PC8_050

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCAC

Length

57 nucleotides

Bulged bases

6PC8|1|I|U|2122, 6PC8|1|I|U|2131, 6PC8|1|I|U|2132, 6PC8|1|I|A|2135, 6PC8|1|I|C|2145, 6PC8|1|I|C|2160, 6PC8|1|I|C|2164, 6PC8|1|I|U|2172, 6PC8|1|I|C|2174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PC8|1|I|G|2121
6PC8|1|I|U|2122
6PC8|1|I|G|2123
6PC8|1|I|G|2124
6PC8|1|I|G|2125
6PC8|1|I|A|2126
6PC8|1|I|G|2127
6PC8|1|I|G|2128
6PC8|1|I|C|2129
6PC8|1|I|U|2130
6PC8|1|I|U|2131
6PC8|1|I|U|2132
6PC8|1|I|G|2133
6PC8|1|I|A|2134
6PC8|1|I|A|2135
6PC8|1|I|G|2136
6PC8|1|I|U|2137
6PC8|1|I|G|2138
6PC8|1|I|U|2139
6PC8|1|I|G|2140
6PC8|1|I|G|2141
6PC8|1|I|A|2142
6PC8|1|I|C|2143
6PC8|1|I|G|2144
6PC8|1|I|C|2145
6PC8|1|I|C|2146
6PC8|1|I|A|2147
6PC8|1|I|G|2148
6PC8|1|I|U|2149
6PC8|1|I|C|2150
6PC8|1|I|U|2151
6PC8|1|I|G|2152
6PC8|1|I|C|2153
6PC8|1|I|A|2154
6PC8|1|I|U|2155
6PC8|1|I|G|2156
6PC8|1|I|G|2157
6PC8|1|I|A|2158
6PC8|1|I|G|2159
6PC8|1|I|C|2160
6PC8|1|I|C|2161
6PC8|1|I|G|2162
6PC8|1|I|A|2163
6PC8|1|I|C|2164
6PC8|1|I|C|2165
6PC8|1|I|U|2166
6PC8|1|I|U|2167
6PC8|1|I|G|2168
6PC8|1|I|A|2169
6PC8|1|I|A|2170
6PC8|1|I|A|2171
6PC8|1|I|U|2172
6PC8|1|I|A|2173
6PC8|1|I|C|2174
6PC8|1|I|C|2175
6PC8|1|I|A|2176
6PC8|1|I|C|2177

Current chains

Chain I

23S ribosomal RNA

Nearby chains