HL_6PC8_060

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6PC8|1|I|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_060 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1379

The information below is about HL_4WF9_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6PC8|1|I|U|2528
6PC8|1|I|G|2529
6PC8|1|I|A|2530
6PC8|1|I|A|2531
6PC8|1|I|G|2532
6PC8|1|I|U|2533
6PC8|1|I|A|2534
6PC8|1|I|G|2535

Current chains

Chain I

23S ribosomal RNA

Nearby chains