HL_6PCH_028

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6PCH|1|I|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCH_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4161

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6PCH|1|I|C|1064
6PCH|1|I|U|1065
6PCH|1|I|U|1066
6PCH|1|I|A|1067
6PCH|1|I|G|1068
6PCH|1|I|A|1069
6PCH|1|I|A|1070
6PCH|1|I|G|1071
6PCH|1|I|C|1072
6PCH|1|I|A|1073
6PCH|1|I|G|1074

Current chains

Chain I

23S ribosomal RNA

Nearby chains