HL_6PCH_050

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAGAUGC

Length

9 nucleotides

Bulged bases

6PCH|1|I|A|2031, 6PCH|1|I|G|2032

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCH_050 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1529

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6PCH|1|I|G|2027
6PCH|1|I|U|2028
6PCH|1|I|G|2029
6PCH|1|I|A|2031
6PCH|1|I|G|2032
6PCH|1|I|A|2033
6PCH|1|I|U|2034
6PCH|1|I|G|2035
6PCH|1|I|C|2036

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3