HL_6PCH_055

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCH_055 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.3095

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6PCH|1|I|G|2303
6PCH|1|I|G|2304
6PCH|1|I|U|2305
6PCH|1|I|C|2306
6PCH|1|I|G|2307
6PCH|1|I|G|2308
6PCH|1|I|A|2309
6PCH|1|I|C|2310
6PCH|1|I|A|2311
6PCH|1|I|U|2312
6PCH|1|I|C|2313

Current chains

Chain I

23S ribosomal RNA

Nearby chains