HL_6PCH_066

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6PCH|1|I|G|2751, 6PCH|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCH_066 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1174

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6PCH|1|I|C|2745
6PCH|1|I|U|2746
6PCH|1|I|G|2747
6PCH|1|I|A|2748
6PCH|1|I|A|2749
6PCH|1|I|A|2750
6PCH|1|I|G|2751
6PCH|1|I|C|2752
6PCH|1|I|A|2753
6PCH|1|I|U|2754
6PCH|1|I|C|2755
6PCH|1|I|U|2756
6PCH|1|I|A|2757
6PCH|1|I|A|2758
6PCH|1|I|G|2759

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13