HL_6PCQ_027

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCQ_027 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.1161

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6PCQ|1|I|G|978
6PCQ|1|I|A|979
6PCQ|1|I|A|980
6PCQ|1|I|A|981
6PCQ|1|I|C|982
6PCQ|1|I|A|983
6PCQ|1|I|A|984
6PCQ|1|I|C|985

Current chains

Chain I

23S ribosomal RNA

Nearby chains