HL_6PCQ_037

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6PCQ|1|I|A|1535, 6PCQ|1|I|G|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCQ_037 not in the Motif Atlas

Homologous match to HL_5J7L_171

Geometric discrepancy: 0.4448

The information below is about HL_5J7L_171

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6PCQ|1|I|C|1533
6PCQ|1|I|U|1534
6PCQ|1|I|A|1535
6PCQ|1|I|C|1536
6PCQ|1|I|G|1537
6PCQ|1|I|G|1538

Current chains

Chain I

23S ribosomal RNA

Nearby chains