Loop HL_6PCQ

3D structure

PDB id: 6PCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description: E. coli 50S ribosome bound to VM2
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.6 Å

Loop

Sequence: GUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCAC
Length: 57 nucleotides
Bulged bases: 6PCQ|1|I|U|2122, 6PCQ|1|I|U|2131, 6PCQ|1|I|U|2132, 6PCQ|1|I|A|2135, 6PCQ|1|I|C|2145, 6PCQ|1|I|U|2151, 6PCQ|1|I|C|2160, 6PCQ|1|I|U|2172, 6PCQ|1|I|A|2173
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6PCQ|1|I|G|2121
6PCQ|1|I|U|2122
6PCQ|1|I|G|2123
6PCQ|1|I|G|2124
6PCQ|1|I|G|2125
6PCQ|1|I|A|2126
6PCQ|1|I|G|2127
6PCQ|1|I|G|2128
6PCQ|1|I|C|2129
6PCQ|1|I|U|2130
6PCQ|1|I|U|2131
6PCQ|1|I|U|2132
6PCQ|1|I|G|2133
6PCQ|1|I|A|2134
6PCQ|1|I|A|2135
6PCQ|1|I|G|2136
6PCQ|1|I|U|2137
6PCQ|1|I|G|2138
6PCQ|1|I|U|2139
6PCQ|1|I|G|2140
6PCQ|1|I|G|2141
6PCQ|1|I|A|2142
6PCQ|1|I|C|2143
6PCQ|1|I|G|2144
6PCQ|1|I|C|2145
6PCQ|1|I|C|2146
6PCQ|1|I|A|2147
6PCQ|1|I|G|2148
6PCQ|1|I|U|2149
6PCQ|1|I|C|2150
6PCQ|1|I|U|2151
6PCQ|1|I|G|2152
6PCQ|1|I|C|2153
6PCQ|1|I|A|2154
6PCQ|1|I|U|2155
6PCQ|1|I|G|2156
6PCQ|1|I|G|2157
6PCQ|1|I|A|2158
6PCQ|1|I|G|2159
6PCQ|1|I|C|2160
6PCQ|1|I|C|2161
6PCQ|1|I|G|2162
6PCQ|1|I|A|2163
6PCQ|1|I|C|2164
6PCQ|1|I|C|2165
6PCQ|1|I|U|2166
6PCQ|1|I|U|2167
6PCQ|1|I|G|2168
6PCQ|1|I|A|2169
6PCQ|1|I|A|2170
6PCQ|1|I|A|2171
6PCQ|1|I|U|2172
6PCQ|1|I|A|2173
6PCQ|1|I|C|2174
6PCQ|1|I|C|2175
6PCQ|1|I|A|2176
6PCQ|1|I|C|2177

Current chains

Chain I: 23S ribosomal RNA

Nearby chains

No other chains within 10Å

HL_6PCQ_050