HL_6PCQ_067

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6PCQ|1|I|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCQ_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0902

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6PCQ|1|I|G|2819
6PCQ|1|I|A|2820
6PCQ|1|I|A|2821
6PCQ|1|I|G|2822
6PCQ|1|I|A|2823
6PCQ|1|I|C|2824
6PCQ|1|I|G|2825
6PCQ|1|I|A|2826
6PCQ|1|I|C|2827

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3