HL_6PCQ_072

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCAC

Length

49 nucleotides

Bulged bases

6PCQ|1|I|U|1078, 6PCQ|1|I|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCQ|1|I|G|1056
6PCQ|1|I|A|1057
6PCQ|1|I|U|1058
6PCQ|1|I|G|1059
6PCQ|1|I|U|1060
6PCQ|1|I|U|1061
6PCQ|1|I|G|1062
6PCQ|1|I|G|1063
6PCQ|1|I|C|1064
6PCQ|1|I|U|1065
6PCQ|1|I|U|1066
6PCQ|1|I|A|1067
6PCQ|1|I|G|1068
6PCQ|1|I|A|1069
6PCQ|1|I|A|1070
6PCQ|1|I|G|1071
6PCQ|1|I|C|1072
6PCQ|1|I|A|1073
6PCQ|1|I|G|1074
6PCQ|1|I|C|1075
6PCQ|1|I|C|1076
6PCQ|1|I|A|1077
6PCQ|1|I|U|1078
6PCQ|1|I|C|1079
6PCQ|1|I|A|1080
6PCQ|1|I|U|1081
6PCQ|1|I|U|1082
6PCQ|1|I|U|1083
6PCQ|1|I|A|1084
6PCQ|1|I|A|1085
6PCQ|1|I|A|1086
6PCQ|1|I|G|1087
6PCQ|1|I|A|1088
6PCQ|1|I|A|1089
6PCQ|1|I|A|1090
6PCQ|1|I|G|1091
6PCQ|1|I|C|1092
6PCQ|1|I|G|1093
6PCQ|1|I|U|1094
6PCQ|1|I|A|1095
6PCQ|1|I|A|1096
6PCQ|1|I|U|1097
6PCQ|1|I|A|1098
6PCQ|1|I|G|1099
6PCQ|1|I|C|1100
6PCQ|1|I|U|1101
6PCQ|1|I|C|1102
6PCQ|1|I|A|1103
6PCQ|1|I|C|1104

Current chains

Chain I

23S ribosomal RNA

Nearby chains