HL_6PCR_003

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6PCR|1|I|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCR_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.1332

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

6PCR|1|I|G|123
6PCR|1|I|G|124
6PCR|1|I|A|125
6PCR|1|I|A|126
6PCR|1|I|A|127
6PCR|1|I|C|128

Current chains

Chain I

23S ribosomal RNA

Nearby chains