HL_6PCR_052

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6PCR|1|I|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCR_052 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1008

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6PCR|1|I|C|2248
6PCR|1|I|U|2249
6PCR|1|I|G|2250
6PCR|1|I|OMG|2251
6PCR|1|I|G|2252
6PCR|1|I|G|2253
6PCR|1|I|C|2254
6PCR|1|I|G|2255
6PCR|1|I|G|2256

Current chains

Chain I

23S ribosomal RNA

Nearby chains