HL_6PCR_054

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCR_054 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.2504

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6PCR|1|I|G|2303
6PCR|1|I|G|2304
6PCR|1|I|U|2305
6PCR|1|I|C|2306
6PCR|1|I|G|2307
6PCR|1|I|G|2308
6PCR|1|I|A|2309
6PCR|1|I|C|2310
6PCR|1|I|A|2311
6PCR|1|I|U|2312
6PCR|1|I|C|2313

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA