HL_6PCR_059

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCR_059 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.1547

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6PCR|1|I|A|2471
6PCR|1|I|G|2472
6PCR|1|I|U|2473
6PCR|1|I|U|2474
6PCR|1|I|C|2475
6PCR|1|I|A|2476
6PCR|1|I|U|2477
6PCR|1|I|A|2478
6PCR|1|I|U|2479

Current chains

Chain I

23S ribosomal RNA

Nearby chains