HL_6PCR_071

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

6PCR|1|I|U|138, 6PCR|1|I|U|139, 6PCR|1|I|C|140

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCR_071 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3361

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6PCR|1|I|G|136
6PCR|1|I|U|137
6PCR|1|I|U|138
6PCR|1|I|U|139
6PCR|1|I|C|140
6PCR|1|I|G|141
6PCR|1|I|A|142
6PCR|1|I|C|143

Current chains

Chain I

23S ribosomal RNA

Nearby chains