HL_6PCS_004

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

6PCS|1|I|U|138, 6PCS|1|I|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCS_004 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2597

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6PCS|1|I|G|136
6PCS|1|I|U|137
6PCS|1|I|U|138
6PCS|1|I|U|139
6PCS|1|I|C|140
6PCS|1|I|G|141
6PCS|1|I|A|142
6PCS|1|I|C|143

Current chains

Chain I

23S ribosomal RNA

Nearby chains