HL_6PCS_026

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)GCUAACGU

Length

10 nucleotides

Bulged bases

6PCS|1|I|U|958, 6PCS|1|I|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCS_026 not in the Motif Atlas

Homologous match to HL_5J7L_159

Geometric discrepancy: 0.1157

The information below is about HL_5J7L_159

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCS|1|I|G|954
6PCS|1|I|PSU|955
6PCS|1|I|G|956
6PCS|1|I|C|957
6PCS|1|I|U|958
6PCS|1|I|A|959
6PCS|1|I|A|960
6PCS|1|I|C|961
6PCS|1|I|G|962
6PCS|1|I|U|963

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA