HL_6PCS_028

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAAAGCGUAAUAGCUCAC

Length

50 nucleotides

Bulged bases

6PCS|1|I|U|1078, 6PCS|1|I|A|1084, 6PCS|1|I|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCS|1|I|G|1055
6PCS|1|I|G|1056
6PCS|1|I|A|1057
6PCS|1|I|U|1058
6PCS|1|I|G|1059
6PCS|1|I|U|1060
6PCS|1|I|U|1061
6PCS|1|I|G|1062
6PCS|1|I|G|1063
6PCS|1|I|C|1064
6PCS|1|I|U|1065
6PCS|1|I|U|1066
6PCS|1|I|A|1067
6PCS|1|I|G|1068
6PCS|1|I|A|1069
6PCS|1|I|A|1070
6PCS|1|I|G|1071
6PCS|1|I|C|1072
6PCS|1|I|A|1073
6PCS|1|I|G|1074
6PCS|1|I|C|1075
6PCS|1|I|C|1076
6PCS|1|I|A|1077
6PCS|1|I|U|1078
6PCS|1|I|C|1079
6PCS|1|I|A|1080
6PCS|1|I|U|1081
6PCS|1|I|U|1082
6PCS|1|I|U|1083
6PCS|1|I|A|1084
6PCS|1|I|A|1085
6PCS|1|I|A|1086
6PCS|1|I|G|1087
6PCS|1|I|A|1088
6PCS|1|I|A|1089
6PCS|1|I|A|1090
6PCS|1|I|G|1091
6PCS|1|I|C|1092
6PCS|1|I|G|1093
6PCS|1|I|U|1094
6PCS|1|I|A|1095
6PCS|1|I|A|1096
6PCS|1|I|U|1097
6PCS|1|I|A|1098
6PCS|1|I|G|1099
6PCS|1|I|C|1100
6PCS|1|I|U|1101
6PCS|1|I|C|1102
6PCS|1|I|A|1103
6PCS|1|I|C|1104

Current chains

Chain I

23S ribosomal RNA

Nearby chains