HL_6PCS_035

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6PCS|1|I|A|1453, 6PCS|1|I|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCS_035 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.0962

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6PCS|1|I|C|1451
6PCS|1|I|G|1452
6PCS|1|I|A|1453
6PCS|1|I|C|1454
6PCS|1|I|G|1455
6PCS|1|I|G|1456
6PCS|1|I|U|1457
6PCS|1|I|U|1458
6PCS|1|I|G|1459

Current chains

Chain I

23S ribosomal RNA

Nearby chains