HL_6PCS_067

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6PCS|1|I|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCS_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0913

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6PCS|1|I|G|2819
6PCS|1|I|A|2820
6PCS|1|I|A|2821
6PCS|1|I|G|2822
6PCS|1|I|A|2823
6PCS|1|I|C|2824
6PCS|1|I|G|2825
6PCS|1|I|A|2826
6PCS|1|I|C|2827

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3