HL_6PCS_073

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCAC

Length

57 nucleotides

Bulged bases

6PCS|1|I|U|2122, 6PCS|1|I|G|2125, 6PCS|1|I|A|2126, 6PCS|1|I|G|2128, 6PCS|1|I|U|2131, 6PCS|1|I|U|2132, 6PCS|1|I|A|2135, 6PCS|1|I|G|2140, 6PCS|1|I|C|2145, 6PCS|1|I|A|2147, 6PCS|1|I|A|2154, 6PCS|1|I|U|2155, 6PCS|1|I|A|2158, 6PCS|1|I|G|2159, 6PCS|1|I|A|2163, 6PCS|1|I|C|2164, 6PCS|1|I|A|2171, 6PCS|1|I|U|2172, 6PCS|1|I|A|2173, 6PCS|1|I|C|2174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6PCS|1|I|G|2121
6PCS|1|I|U|2122
6PCS|1|I|G|2123
6PCS|1|I|G|2124
6PCS|1|I|G|2125
6PCS|1|I|A|2126
6PCS|1|I|G|2127
6PCS|1|I|G|2128
6PCS|1|I|C|2129
6PCS|1|I|U|2130
6PCS|1|I|U|2131
6PCS|1|I|U|2132
6PCS|1|I|G|2133
6PCS|1|I|A|2134
6PCS|1|I|A|2135
6PCS|1|I|G|2136
6PCS|1|I|U|2137
6PCS|1|I|G|2138
6PCS|1|I|U|2139
6PCS|1|I|G|2140
6PCS|1|I|G|2141
6PCS|1|I|A|2142
6PCS|1|I|C|2143
6PCS|1|I|G|2144
6PCS|1|I|C|2145
6PCS|1|I|C|2146
6PCS|1|I|A|2147
6PCS|1|I|G|2148
6PCS|1|I|U|2149
6PCS|1|I|C|2150
6PCS|1|I|U|2151
6PCS|1|I|G|2152
6PCS|1|I|C|2153
6PCS|1|I|A|2154
6PCS|1|I|U|2155
6PCS|1|I|G|2156
6PCS|1|I|G|2157
6PCS|1|I|A|2158
6PCS|1|I|G|2159
6PCS|1|I|C|2160
6PCS|1|I|C|2161
6PCS|1|I|G|2162
6PCS|1|I|A|2163
6PCS|1|I|C|2164
6PCS|1|I|C|2165
6PCS|1|I|U|2166
6PCS|1|I|U|2167
6PCS|1|I|G|2168
6PCS|1|I|A|2169
6PCS|1|I|A|2170
6PCS|1|I|A|2171
6PCS|1|I|U|2172
6PCS|1|I|A|2173
6PCS|1|I|C|2174
6PCS|1|I|C|2175
6PCS|1|I|A|2176
6PCS|1|I|C|2177

Current chains

Chain I

23S ribosomal RNA

Nearby chains