HL_6PCT_017

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

6PCT|1|I|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCT_017 not in the Motif Atlas

Homologous match to HL_5J7L_150

Geometric discrepancy: 0.0942

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6PCT|1|I|U|566
6PCT|1|I|U|567
6PCT|1|I|U|568
6PCT|1|I|U|569
6PCT|1|I|G|570
6PCT|1|I|U|571
6PCT|1|I|A|572
6PCT|1|I|U|573
6PCT|1|I|A|574
6PCT|1|I|A|575

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15