HL_6PCT_049

3D structure

PDB id

6PCT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 41q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGAGAUGC

Length

9 nucleotides

Bulged bases

6PCT|1|I|A|2031, 6PCT|1|I|G|2032

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCT_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1151

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6PCT|1|I|G|2027
6PCT|1|I|U|2028
6PCT|1|I|G|2029
6PCT|1|I|A|2031
6PCT|1|I|G|2032
6PCT|1|I|A|2033
6PCT|1|I|U|2034
6PCT|1|I|G|2035
6PCT|1|I|C|2036

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3