HL_6PIJ_001

3D structure

PDB id

6PIJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Target DNA-bound V. cholerae TniQ-Cascade complex, closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGUAG

Length

7 nucleotides

Bulged bases

6PIJ|1|1|U|54

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PIJ_001 not in the Motif Atlas

Geometric match to HL_2XLK_001

Geometric discrepancy: 0.1761

The information below is about HL_2XLK_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6PIJ|1|1|C|50
6PIJ|1|1|G|51
6PIJ|1|1|A|52
6PIJ|1|1|G|53
6PIJ|1|1|U|54
6PIJ|1|1|A|55
6PIJ|1|1|G|56

Current chains

Chain 1

guide RNA

Nearby chains

Chain H

type I-F CRISPR-associated endoribonuclease Cas6/Csy4