HL_6PJ6_004

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6PJ6|1|I|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_004 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.1872

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6PJ6|1|I|U|137
6PJ6|1|I|U|138
6PJ6|1|I|U|139
6PJ6|1|I|C|140
6PJ6|1|I|G|141
6PJ6|1|I|A|142

Current chains

Chain I

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L23