HL_6PJ6_008

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_008 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.0608

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

6PJ6|1|I|C|246
6PJ6|1|I|G|247
6PJ6|1|I|G|248
6PJ6|1|I|C|249
6PJ6|1|I|G|250
6PJ6|1|I|A|251
6PJ6|1|I|G|252

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain f

50S ribosomal protein L28

Chain l

50S ribosomal protein L35