HL_6PJ6_013

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6PJ6|1|I|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0944

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6PJ6|1|I|G|410
6PJ6|1|I|G|411
6PJ6|1|I|A|412
6PJ6|1|I|C|413
6PJ6|1|I|C|414
6PJ6|1|I|A|415
6PJ6|1|I|U|416
6PJ6|1|I|C|417

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15