HL_6PJ6_027

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_027 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.0709

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6PJ6|1|I|G|978
6PJ6|1|I|A|979
6PJ6|1|I|A|980
6PJ6|1|I|A|981
6PJ6|1|I|C|982
6PJ6|1|I|A|983
6PJ6|1|I|A|984
6PJ6|1|I|C|985

Current chains

Chain I

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L20

Chain Z

50S ribosomal protein L21

Chain h

50S ribosomal protein L30