HL_6PJ6_029

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_029 not in the Motif Atlas

Geometric match to HL_5J7L_154

Geometric discrepancy: 0.1976

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6PJ6|1|I|C|1092
6PJ6|1|I|G|1093
6PJ6|1|I|U|1094
6PJ6|1|I|A|1095
6PJ6|1|I|A|1096
6PJ6|1|I|U|1097
6PJ6|1|I|A|1098
6PJ6|1|I|G|1099

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain Q

50S ribosomal protein L11

Chain m

50S ribosomal protein L36