HL_6PJ6_052

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6PJ6|1|I|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_052 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0989

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6PJ6|1|I|C|2248
6PJ6|1|I|U|2249
6PJ6|1|I|G|2250
6PJ6|1|I|OMG|2251
6PJ6|1|I|G|2252
6PJ6|1|I|G|2253
6PJ6|1|I|C|2254
6PJ6|1|I|G|2255
6PJ6|1|I|G|2256

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain e

50S ribosomal protein L27