HL_6PJ6_054

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_054 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.2566

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6PJ6|1|I|G|2303
6PJ6|1|I|G|2304
6PJ6|1|I|U|2305
6PJ6|1|I|C|2306
6PJ6|1|I|G|2307
6PJ6|1|I|G|2308
6PJ6|1|I|A|2309
6PJ6|1|I|C|2310
6PJ6|1|I|A|2311
6PJ6|1|I|U|2312
6PJ6|1|I|C|2313

Current chains

Chain I

23S rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L5