HL_6PJ6_067

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

6PJ6|1|I|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0763

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6PJ6|1|I|G|2819
6PJ6|1|I|A|2820
6PJ6|1|I|A|2821
6PJ6|1|I|G|2822
6PJ6|1|I|A|2823
6PJ6|1|I|C|2824
6PJ6|1|I|G|2825
6PJ6|1|I|A|2826
6PJ6|1|I|C|2827

Current chains

Chain I

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain V

50S ribosomal protein L17

Chain X

50S ribosomal protein L19