HL_6PPF_003

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6PPF|1|A|A|124

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_003 not in the Motif Atlas

Homologous match to HL_4WF9_003

Geometric discrepancy: 0.1753

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6PPF|1|A|G|122
6PPF|1|A|G|123
6PPF|1|A|A|124
6PPF|1|A|A|125
6PPF|1|A|A|126
6PPF|1|A|C|127

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain d

50S ribosomal protein L34