HL_6PPF_008

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_008 not in the Motif Atlas

Homologous match to HL_4WF9_008

Geometric discrepancy: 0.2269

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.3

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

6PPF|1|A|C|249
6PPF|1|A|G|250
6PPF|1|A|G|251
6PPF|1|A|C|252
6PPF|1|A|G|253
6PPF|1|A|A|254
6PPF|1|A|G|255

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15