HL_6PPF_014

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6PPF|1|A|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_014 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1413

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

6PPF|1|A|G|457
6PPF|1|A|G|458
6PPF|1|A|A|459
6PPF|1|A|C|460
6PPF|1|A|C|461
6PPF|1|A|A|462
6PPF|1|A|U|463
6PPF|1|A|C|464

Current chains

Chain A

23S rRNA

Nearby chains