HL_6PPF_017

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUUAACG

Length

8 nucleotides

Bulged bases

6PPF|1|A|U|591, 6PPF|1|A|C|594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_017 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.2203

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

6PPF|1|A|C|588
6PPF|1|A|G|589
6PPF|1|A|U|590
6PPF|1|A|U|591
6PPF|1|A|A|592
6PPF|1|A|A|593
6PPF|1|A|C|594
6PPF|1|A|G|595

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21