HL_6PPF_018
3D structure
- PDB id
- 6PPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Bacterial 45SRbgA ribosomal particle class B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UUUUGUAGAA
- Length
- 10 nucleotides
- Bulged bases
- 6PPF|1|A|A|618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6PPF_018 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.2528
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6PPF|1|A|U|610
6PPF|1|A|U|611
6PPF|1|A|U|612
6PPF|1|A|U|613
6PPF|1|A|G|614
6PPF|1|A|U|615
6PPF|1|A|A|616
6PPF|1|A|G|617
6PPF|1|A|A|618
6PPF|1|A|A|619
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
- Chain R
- 50S ribosomal protein L21
- Chain b
- 50S ribosomal protein L32
Coloring options: