HL_6PPF_024

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAAUG

Length

7 nucleotides

Bulged bases

6PPF|1|A|A|828, 6PPF|1|A|U|831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_024 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.2069

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

6PPF|1|A|U|826
6PPF|1|A|G|827
6PPF|1|A|A|828
6PPF|1|A|A|829
6PPF|1|A|A|830
6PPF|1|A|U|831
6PPF|1|A|G|832

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2