HL_6PPF_037

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAUUGGAUAU

Length

12 nucleotides

Bulged bases

6PPF|1|A|A|1499, 6PPF|1|A|U|1500, 6PPF|1|A|A|1506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_037 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3178

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6PPF|1|A|G|1496
6PPF|1|A|G|1497
6PPF|1|A|U|1498
6PPF|1|A|A|1499
6PPF|1|A|U|1500
6PPF|1|A|U|1501
6PPF|1|A|G|1502
6PPF|1|A|G|1503
6PPF|1|A|A|1504
6PPF|1|A|U|1505
6PPF|1|A|A|1506
6PPF|1|A|U|1507

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17