HL_6PPF_041

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

6PPF|1|A|A|1659, 6PPF|1|A|A|1661, 6PPF|1|A|A|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_041 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1537

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6PPF|1|A|C|1657
6PPF|1|A|G|1658
6PPF|1|A|A|1659
6PPF|1|A|C|1660
6PPF|1|A|A|1661
6PPF|1|A|C|1662
6PPF|1|A|A|1663
6PPF|1|A|G|1664

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34